王晟,个人主页:https://homes.cs.washington.edu/~swang/
教育经历:
博士 计算机科学 UIUC 2013 - 2018。导师:翟成祥,彭健
学士 计算机科学 北京大学 2009 - 2013。 导师:张铭
工作经历:
2018 - 2021年,王晟博士赴 Stanford 进行博士后研究工作,合作导师为Russ Altman。期间研究方向涵盖基因表达、药物发现等多个生物信息学领域。在Nature machine intelligence, Nature communications,RECOMB 等顶级期刊与会议发表过多篇重要工作。
2021 - 至今,王晟博士前往 Paul G. Allen School of Computer Science and Engineering, University of Washington 担任助理教授,主要研究大规模前沿的生成式AI在生物医疗问题中的应用,包括数字病理学、染色质结构预测和基于基因组的药物发现。期间在Nature, Science, Nature biotechnology, Nature methods, Nature communications,Nature machine intelligence 等顶级期刊上均有重要工作发表。
主要论文:
[1] Hanwen Xu, Naoto Usuyama, Jaspreet Bagga, Sheng Zhang, Rajesh Rao, Tristan Naumann, Cliff Wong, Zelalem Gero, Javier González, Yu Gu, Yanbo Xu, Mu Wei, Wenhui Wang, Shuming Ma, Furu Wei, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Jaylen Rosemon, Tucker Bower, Soohee Lee, Roshanthi Weerasinghe, Bill J. Wright, Ari Robicsek, Brian Piening, Carlo Bifulco#, Sheng Wang#, Hoifung Poon#. A whole-slide foundation model for digital pathology from real-world data. Nature, 2024.
[3] Addie Woicik, Mingxin Zhang, Janelle Chan, Jianzhu Ma, Sheng Wang#. Sagittarius: Extrapolating Heterogeneous Time-Series Gene Expression Data. Nature Machine Intelligence, 2023.
[4] Hanwen Xu, Addie Woicik, Hoifung Poon, Russ Altman, Sheng Wang#. Multilingual translation for zero-shot biomedical classification using BioTranslator. Nature Communications, 2023.
[5] Jiacheng Lin, Hanwen Xu, Addie Woicik, Jianzhu Ma, Sheng Wang#. Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction. RECOMB, 2023.
[6] The Tabula Sapiens Consortium*, et al. The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans. Science 2022.
[7] Vorperian, Sevahn K., Mira N. Moufarrej, Tabula Sapiens Consortium, and Stephen R Quake. Cell types of origin of the cell-free transcriptome. Nature biotechnology, 2022.
[8] Sheng Wang*, Angela Oliveira Pisco*, Aaron McGeever, Maria Brbic, Marinka Zitnik, Spyros Darmanis, Jure Leskovec, Jim Karkanias, Russ B. Altman. Nature Communications, 2021.
[9] Sheng Wang, Emily Flynn, Russ B. Altman. Set2Gaussian: Embedding GeneSets as Gaussian Distributions for Large-scale Gene Set Analysis. Nature Machine Intelligence, 2020.
[10] Sheng Wang*, Jianzhu Ma*, Wei Zhang, John Paul Shen, Justin Huang, Jian Peng, Trey Ideker. Typing tumors using pathways selected by somatic evolution. Nature Communications, 2018.